1223 days ago
1223 days ago
Install NCBI entrez-direct and esearch using conda !
$ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 13.9-pl5262he881be0_...1107 days ago
Download genome using NCBI esearch command line !
...asta > seq1.fa esearch -db nucleotide -query "CP003784.1" | efetch -format fasta > seq2.fa #fastANI for alignment free comparision #conda install -c bioconda fastani fastANI -q seq1.fa...1107 days ago
1060 days ago
1060 days ago
1060 days ago
1060 days ago
Install Minimap2 using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda minimap2 Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1060 days ago
1060 days ago