Results for "contigs"
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...h which adopts greedy-like prediction strategy for assembling reads to contigs and scaffolds. Instead of usi...the correct extension in 99.7% of cases. PERGA will try to extend the contigs by all feasible nucleotides a...2176 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented wit...2176 days ago
HALC: High throughput algorithm for long read error correction
...ion. HALC aligns the long reads to short read contigs from the same species with a...uding its true genome region’s repeats in the contigs sufficiently similar to it (s...an thus result in 11.4-60.7% longer assembled contigs than the existing algorithms.2173 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
...the strategy that it implements for genome assembly: PRICE uses paired-read information to iteratively increase the size of existing contigs. Initially, those contigs can be individual reads from...2170 days ago
npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microbi...2170 days ago
- GMcloser uses likelihood-based classifiers calculated from the alignment statistics between scaffolds, contigs and paired-end reads to correctly assign contigs or long reads to gap regions of scaffolds, there...
2170 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
...genomes. This tool aims to improve the completeness of both protein-coding and non-coding genes. After this tool was applied to scaffolding human contigs, the structures of both prote...2169 days ago
- ...zip OUT.delta Then use the OUT.delta.gz file for upload. Upload the .delta or delta.gz file (view example) to Assemblytics Important: Use only contigs rather than scaffolds from th...
2167 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
...performance were compared with PBcR-Mhap pipeline, FALCON and Canu(v1.3) in five real datasets. The quality of assembled contigs produced by MECAT is the same...2201 days ago
- ...etion error. Here is how I use the blasr to align PacBio reads to the contigs (target.fasta). The “ta...2 to 3 hours aligning 3G PacBio Reads to 10^6 sequences of short read contigs with a mean 3.5kbp length....
2189 days ago
