Results for "correcting"
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LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and...2170 days ago
Pollux: platform independent error correction of single and mixed genomes
...rs introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting substitution errors, we locat...2547 days ago
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Genome Assembly Tools and Software - PART2 !!
...utomatically high quality sequence by ordering contigs, closing gaps, correcting sequence errors and transferr...ontains programs that support mapping of reads to a reference genome, correcting sequencing errors by locally...2689 days ago
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Useful Publications and Websites for Deep Sequencing Data Analysis
...titative transcript expression profiling. Łabaj et al, Bioinformatics 27:i383 - i391, 2011 Full Text Improving RNA-Seq expression estimates by correcting for fragment bias. Roberts et...3783 days ago
Tools for bacterial whole genome annotation
...es of gaps between them; (ii) IMAGE uses paired-end reads to extend contigs and close gaps within the scaffolds; (iii) ICORN for identifying and correcting small errors in consensus seq...2335 days ago
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ResearchLabs posts
- ...information processing principles in life (systems biology) and making a computer out of bio-molecules. The key expertise of the lab is in error-correcting codes. We also work in classi...
3889 days ago
Bio-Scripts
Tadpole is 250x faster than SPADes assembler !
...halt correction in that direction. rbi=t (requirebidirectional) Require agreement from both directions when correcting errors in the middle part of...980 days ago
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- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 2016. ...
Tags: Bioinformatics, LoRMA, Tool, Correcting, Errors, Reads, Sequencing
2170 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase in the number of sequenced genomes, both prokaryotic and eukaryotic. However, short reads are difficult to assemble and often lead to highly fragmented assemblies. The recent developments in long reads sequencing m...Tags: CoLoRMap, Correcting, Long, Reads, Mapping, short, reads, pacbio
2088 days ago
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