Results for "count"
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Most Commonly used Awk by Bioinformatician
...")>0)l[$1]=$0}$1 in l{print $0"\t"l[$1]}' file2.txt > output.txt count number of occurrence of colum...he first occurrence (uniq): awk '!($2 in l){print;l[$2]=1}' input.txt count different words (wc): awk '{...3927 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ly expressed genes from RNA-seq data. Wang et al., Bioinformatics. 26(1):136-8. 2010 PubMed DEseq: Differential expression analysis for sequence count data. Anders and Huber, Genom...3794 days ago
Next generation sequencing in R or bioconductor environment
...P-seq processing pipeline SPP Tutorial MACS SIPeS RNA-Seq Analysis Counting Reads that Overlap with An...alignments against a reference genome. The two main functions for read counting provided by this infrastru...3639 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...import the sample data in FASTA, FASTQ or tag-count format. In addition, prealign...ows for testing between variants and traits; accounts for confounding factors ex....of noncoding elements, modeling their mutation count; Dependent on C++ and BEDtool...2923 days ago
- ...y job. It also does kill and requeue on memory rather than just on core count. Memory Memory requests are...y space and you cannot exceed the amount of memory that you request. Accounting Tools SLURM has a back end...
2929 days ago
Source Code and Pseudo Code !!
...rint "failed" endif 2. Set total to zero Set grade counter to one While grade counter is less than or equal to te...are initialized as part of their declarations. E.g. "initialize count to zero" is a good entry.Func...2674 days ago
- ...::: *.fastq To gzip all your fastq files using pigz: pigz *.fastq To count all sequences in a fasta file: grep "^>" yourfile.fasta -c To count all sequences in all fasta fi...
2232 days ago
