Results for "counts"
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KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT: hist: Create an hist...1985 days ago
Qualimap2: Evaluating next generation sequencing alignment data
...l User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. Supported types of expe...2067 days ago
EyeChrom: Visualizing Chromosome Count Data From Plants
It's goal is to show chromosmal data per genus. Select the genus, and the plot will show the records found for it in the Chromosome Counts Database. note: Report an issue via Gihub: g...1948 days ago
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
ChIP-seq simulation pipeline, ChIPulate, we assess the impact of various biological and experimental sources of variation on several outcomes of a ChIP-seq experiment,...1872 days ago
- ...Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common ty...
1577 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
...om raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the frequency of k-mers in se...1563 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...: 0) 0-start from begining(storing kmers in bloom filter) ; 1-start from count kmers showed up in bloom filter; 2-start from dumping kmer counts into a jf_dump file; 3-sta...1555 days ago
- ...cates how well the assembly matches read data for each k-mer. where, c is the count of a k-mer from reads, m is the mode of counts of read k-mers, and n&nb...
1420 days ago
