Results for "coverage"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...t sequencing data. Ilie et al, Bioinformatics 27(3):295, 2011 Full Text Error correction of high-throughput sequencing datasets with non-uniform coverage. Medvedev et al., Bioinformat...3786 days ago
Next generation sequencing in R or bioconductor environment
...ng exercise for an example of using rtracklayer to visualize alignment coverage. Documentation biomaRt The...peaks with the BayesPeak package as well as the incorporation of read coverage information obtained by the c...3631 days ago
Commercial and public next-gen-seq (NGS) software
...read sequencing technologies, such as Solexa or 454. Need about 20-25X coverage and paired reads. Developed b...experiments. It uses a naive algorithm for identifying regions of high coverage, which represent Chromatin Im...3525 days ago
Software packages for next gen sequence analysis
...read sequencing technologies, such as Solexa or 454. Need about 20-25X coverage and paired reads. Developed b...experiments. It uses a naive algorithm for identifying regions of high coverage, which represent Chromatin Im...3249 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...covariates); Analyzes mutations discovered in DNA sequencing to identify genes that were mutated more often than expected Input: mutations.maf, coverage.txt, covariates.txt Output:...2915 days ago
- ...that pile up at the same genomic location. For example, 30X read-depth coverage indicates that the genomic lo...NA sequence reads for comparisons of genomes from various individuals CoverageDepth The number of nucleotide...
2875 days ago
Genome Assembly Tools and Software - PART1 !!
...ic studies incorporating read COverage, CorrelAtion, sequence COmpos...with their sizes representing coverage of their corresponding isofor...emble large genomes from high coverage short read data. The major go...fragments, both at about 45x coverage. Sequence from longer fragmen...2692 days ago
Quick next generation sequencing (NGS) terms definition
...n (indel).read depth: number of reads that map within a region of the genome. Overall genome-wide read depth is also referred to as depth of coverage. It is expected that the numb...2529 days ago
Awesome perl frameworks, libraries and software - PART 1
...he old perl SDL binding on cpan.org yanick/Template-Mustache - Drawing Mustaches on Perl, for fun and profit pjcj/Devel--Cover - Code coverage metrics for Perl sebthebert/...2496 days ago
- ...ted list of k-mer sizes (must be odd and less than 128) [default: 'auto'] --cov-cutoff <float> coverage cutoff value (a positive floa...
2357 days ago
