Results for "create"
Bio-Scripts
JitMeta (base) ➜ JitMeta conda create --name JitMetaENV Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1230 days ago
- ...yum install -y expat-devel openssl-devel mysql-devel libxml2-devel # Create a folder where you want to in...Download source tarball into a subfolder named src, and untar: curl --create-dirs -L -o src/perl-5.24.1.ta...
2157 days ago
- ...{ if ($seqFile =~ /\.fa$/) # if file ends in .fa { print "Processing $seqFile\n"; $outFile = $seqFile; # Create $outFile name $outFi...
2929 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::Es...2929 days ago
A multilayer perceptron (MLP) neural network in Perl
...bourn Oct 2004 #################################################### #Tanh hidden neurons #Linear output neuron #To include an input bias create an #extra input in the train...2929 days ago
Count GC Content in nucleotide sequence with Perl
...$fasta_file") ) { print "Got a bad fasta file: $fasta_file\n\n"; exit; } unless ( open(OUT, ">$out_file") ) { print "Couldn't create $out_file\n"; exit; }...2918 days ago
- ...-h print this help message Create a PNG ("portable network grap...ault: null -- triangular dot plot created is th...# Close that DB dbmclose %DOT; # Create and print the output....
2706 days ago
Extract fasta sequence from a multifasta file with coordinates
...nce )) { die "Sequence $seq not found. \n" } print ">$id\n", "$sequence\n"; } __END__ use Bio::DB::Fasta; # Create database from a directory of...2545 days ago
Download the genome from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # Create a Directory mkdir genome cd genom..."$f") extension="${filename##*.}" filename="${filename%.*}" # Create a directory with appending G...2545 days ago
Download the gff files from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # Create a Directory mkdir genome_gff cd g..."$f") extension="${filename##*.}" filename="${filename%.*}" # Create a directory with appending G...2536 days ago
