Results for "dRAD and ddRAD sequencing"
Bio-Scripts
...ES/FILE gatk forwards commands to GATK and adds some sugar for submittin...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g....Collect whole genome sequencing-related metrics. Colle...2073 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paire...ly downloading data from a particular sequencing run ID fastq-dump -...ng. The --split-files part of the command e...s we get two files, one for the first and second mate in each pair. We'll use...1557 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # Th...1540 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP...hundreds of microbial genomes and highly contiguous reconstruct...ecting structural variants in sequencing data using genome-wide local...n bacteria using whole-genome sequencing (WGS) data. It is particularl...1509 days ago
- Use pen and paper the assemble it. If you are brave enough, you can try to assem...AGCCGGACCT TATGATCATT TCATTAGGCG AGGCGGAGCT HINT: There is NO sequencing errors HINT: Overlaps are...
1213 days ago
Install Varscan on Ubuntu / Linux !
#Varscan is a java program designed to call variants in sequencing data. It was developed at the Genome Institute at Washington University and is hosted on github. To use Varscan...821 days ago
