3847 days ago
Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrast...rga: Montgomery and sensitive data 24 intel cores 256GB RAM 5...s, and other highly processed data here /mnt/data/ globally...n def write( self, data ): self.lock.acquire...use case 3 we used the ENCODE datasets ...1137 days ago
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figur..., this influx of DNA sequence data has encouraged laboratory scientists to engage large datasets in comparative sequence a...f biologists to analyze large datasets by using sophisticated co...s when analyzing genome scale datasets.3785 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that inte...3704 days ago
3651 days ago
Managing and Analyzing Next-Generation Sequence Data
Centralized Bioinformatics Core Facilities provide shared resources for the computati...ogy. Recently faced with an unprecedented flood of data generated by the next generat...g infrastructure upgrades, staffing, and tools for data analyses...3636 days ago
A Brief Bioinformatics Tutorial
...iently for a particular protein sequence, how to blast it against the database of your choice to find ho...nd how to edit this alignment. The Structure part is about molecular visualization, homology modeling and struct...3635 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bact...mplex, reproducible workflows for NGS microbiology data analysis. Enabling microbiolo...searchers to conduct their own custom analysis and data manipula...3572 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS ana...oys a reference genome, including how reads from a dataset are m...3583 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-...3572 days ago