Results for "data visualization"
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GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of...2945 days ago
- High-throughput genomics has revolutionized biological research, however, while the number of sequenced genome...om hundreds of species, to gauge completeness of rapidly accumulating genomic data and sati...
2934 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types o...r high-throughput sequencing reads. Cleaning your data in this way is often required...acters. Also, paired-end reads and even colorspace data is suppo...
2931 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The la...
2931 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds o...ish requires a reference sequence and a paired end re-sequencing data set. Hag...2923 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipu...esenting large-scale multi-sample genomic research data. It can...2923 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads t...AIK was the only aligner to provide consistent mappings for all the generated data (sequenc...2923 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2921 days ago
- Database to Database Conversions db2db allows for conversions of identifiers from one database to other database identifiers or annotations. To use db2db select the input type of your data, changin...
2910 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throu...g. The package is designed to deal with sequencing data from RRBS and its variants, b...tion, methylKit can deal with base-pair resolution data for 5hmC...
2909 days ago
