Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipulating space delimited data. Althoug...3910 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...s: an integrated platform for visualization and analysis of high...expressed genes from RNA-seq data. Wang et al., Bioinformatics....toring and searching sequence data in the cloud. OConnor et al, BMC Bioi...the Integrated Genome Browser visualization tool is here Course material...3777 days ago
List of bioinformatics open source projects/software.
...tics platform and graph based database built around most data av...ttps://github.com/biorails a data management system designed to...xploration of diverse genomic data IntAct http://www.ebi.ac.uk/intact/...application for the analysis, visualization and data-mining of large-scal...3754 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief de...n size reductions from allele data frequencies http://www.ensam....ed model intended to simulate datasets under a very broad range...that simulates sequence-like data over large genomic regions in...osition of typical metagenome data sets htt...3735 days ago
List of In-silico Binding Site Prediction Tools
...query protein to members of a database of protein 3D structures...ered during protein structure visualization and analysis but has been use..., source code, and prediction visualizations are available on the ConCavi...ween surfaces from coordinate data supplied in a PDB file. MSPocket: htt...3741 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help...manage your systems effectively and handle huge amount of genomic/biological data with an...3703 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" fil...3626 days ago
Next generation sequencing in R or bioconductor environment
...AM formatted binary alignment data. SAM/BAM is quickly becoming...ing sample code uses the test data set from the above BayesPeak...iocViews HT-Seq Data Visualization ggbio: ggplot2 extension for...bl TileQC: Flow Cell Quality Visualization rtracklayer: R interface to...3622 days ago
Commercial and public next-gen-seq (NGS) software
...or Next Generation Sequencing data analysis. JMP Genomics - Next gen visualization and statistics tool...Illumina, SOLiD and Roche-FLX data formats and allows the user to modulat...ser/Alignment Viewer/Assembly Database EagleView - An information-rich ge...3516 days ago
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