Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...mbler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial project...1857 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...mbler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial project...1762 days ago
Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets
...nscale team at Inria. Contact: claire dot lemaitre at inria dot fr Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets. https://gatb.inria.fr/s...1762 days ago
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.1731 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
...d, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantif...d genomes since it does not require genome assembly and works on small datasets (< 1X). https://github.co...1725 days ago
BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
...interface BioJupies now supports user accounts! Sign in from the top right corner of the page for access to unlimited private notebooks, RNA-seq datasets and alignment jobs.1229 days ago
MEC: Contig Misassembly Correction
...ndidate misassemblies based on the distribution of paired-end reads and the statistical analysis of GC-contents. We apply MEC to four real contig datasets, and carry out experiments to...1548 days ago
BlobToolKit: A toolkit for genome assembly QC
Filtering raw genomic datasets is essential to avoid chimeric assemblies and...filtering of preliminary or published genomic datasets even for highly fragmented as...o convert assemblies and analysis results into datasets that can be further processed...1532 days ago
Phytozome v12.1: plant science community hub for accessing palnts genomic data
...d the broader plant science community a hub for accessing, visualizing and analyzing JGI-sequenced plant genomes, as well as selected genomes and datasets that have been sequenced else...1507 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
...ces to identify RBHs. This is problematic, as the modern deluge of sequencing data means that comparative genomics analyses could be performed on datasets of thousands of strains.1358 days ago