Results for "de novo"
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Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heter...Maruyama H, Kohara Y, Fujiyama A, Hayashi T, Itoh T, “Efficient de novo assembly of highly heterozygo...2911 days ago
Hagfish - assess an assembly through creative use of coverage plots
...ion Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or ident...2903 days ago
- ...proportional to the phylogenetic distance between database match sequences and the query genome. These scores are useful not only for large-scalede novo predictions of horizonta...
2871 days ago
Bioinformatics tools and software
...d other marker genes. Highly accurate OTU sequences and improved diversity measures. UCHIME >Chimeric sequence detection. PILER >De novo genome repeat finder. PI...2858 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated f...2624 days ago
- ...ialized applications. Training Resources: Bioinformatics Workshop (Webinars) Bioinformatics Training Slides Specialized Applications: De Novo Assembly Transcriptome analy...
2624 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( REC...
2814 days ago
- ...ecent technological progress has greatly facilitated de novo genome sequencing. However, de novo assemblies consist in ma...analysis. Visualization and quality assessment of de novo genome assemblies Citation...
2808 days ago
Method in Comparative genomics !!
...500 genes (10% of previously annotated genes) and refining the gene structure of hundreds of genes. We present novel methods for the systematic de novo identification of regulatory...2731 days ago
- ...e pipeline consists of three steps/modules: redundancy reduction: detection and selectively removal of redundant contigs from an initial de novo assembly scaffolding: j...
2800 days ago
