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Results for "designed"

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• • BioStar@biostar

  

  Comment on "Read Simulators"

  ...on, and deletion errors. dwgsim: dwgsim is a short read simulator that can generate synthetic reads from whole genome sequencing data. It is designed to simulate reads from large...

  461 days ago

• • Rahul Nayak@rahul

  

  Comment on "Want to Know which genome assembler rule the world ?"

  Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).

  1995 days ago

• • Jit@jit.aber

  

  Comment on "AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data"

  ...ter, reformat and trim next-generation sequence data. It is particular designed for 454/Roche data, but can a...ble contamination sequences. QC3 QC3 a quality control tool designed for DNA sequencing data for r...

  2182 days ago

• • Poonam Mahapatra@poonam

  

  Comment on "Run miniasm assembler on nanopore reads !"

  I followed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do no...

  2220 days ago

• • Jit@jit.aber

  

  Comment on "Platanus"

  Platanus README ***** VERSION ***** 1.2.3 ***** DESCRIPTION ***** Platanus is a de novo assembler designed to assemble high-throughput data. It can handle highly heterozy...

  2844 days ago

• • Martin Jones@martin

  

  Comment on "Commercial and public next-gen-seq (NGS) software"

  dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms https://peerj.com/articles/431/

  3593 days ago

• • Martin Jones@martin

  

  Comment on "List of popular bioinformatics software/tools"

  skewer (transferred from https://sourceforge.net/projects/skewer) implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences. https://github.com/relipmoc/skewer

  3618 days ago

• • Jitendra Narayan@admin

  

  Comment on "Most Commonly used Awk by Bioinformatician"

  There is BioAwk, specially designed for bioinformatician by ialbert.  .... https://github.com/ialbert/bioawk-tools Njoy

  3953 days ago

• • Jit@jit.aber

  

  Comment on "Online Bioinformatics Courses"

  ...s cover sequence analysis, microarray expression analysis, Bayesian methods, control theory, scale-free networks, and biotechnology applications. Designed for those with a computationa...

  3989 days ago