Genome Assembly Tools and Software - PART1 !!
...ution – Improving Newbler Genome Assemblies. Gap Resolution was developed by DOE Joint Genome Institute...of genomes using sequence data. There are two main executables, being developed in parallel streams: cortex_c...2683 days ago
Edit distance application in bioinformatics !
...tical). Apparently based on edit distance. Text::Dice calculates Dice's coefficient for two strings. This formula was originally developed to measure the similarity of...2338 days ago
Tools for bacterial whole genome annotation
...ion sequences, transposons and other mobile elements. PGAP: NCBI has developed an automatic prokaryotic geno...Genome Automatic Annotation Pipeline (PGAAP; see Pubmed Article) developed in 2005 has been replaced wit...2329 days ago
Ancestral sequence reconstruction steps !
...hms and of better sequencing and synthesis techniques, the method was developed further in the early 2000s to...genes. Over the last decade, ancestral protein resurrection has developed as a strategy to reveal the m...2176 days ago
List of non-commercial NGS genotype-calling software
...data, which are produced extensively by genetics and genomics studies, relies crucially on the accurate calling of SNPs and genotypes. Recently developed statistical methods both impr...2094 days ago
581 days ago
Mitochondrial genome assembly tools !
...ng data. MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads MITObim: MITObim is a tool specifically developed for the iterative assembly of...240 days ago