CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...currently implemented in all free and commercial bioinformatics packages. However, with the advent of Next Generation Sequencing (NGS) and the development of new sequencing techniques,...2490 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...s to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads. So far miniasm is in early development stage. It has only been teste...2365 days ago
Mash: fast genome and metagenome distance estimation using MinHash
...ary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build...2350 days ago
1397 days ago
Building Web UIs With Mojolicious Perl
...and by far my favorite. Mojolicious aims to provide a complete web development experience. It thus has no hard dependencies, comes with a built-in development and production server and man...2336 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
...ped on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute of Singapore (GIS). Ra is in development since 2014 in the form of sev...2334 days ago
mojolicious: a next generation web framework for the Perl programming language.
...framework, static file server, CGI/PSGI detection, first class Unicode support and much more for you to discover. A powerful web development toolkit, that you can use for...2319 days ago
UCSC SARS-CoV-2 Genome Browser
...s, RT–PCR and sequencing primers and CRISPR guides. We invite all investigators to contribute to this resource to accelerate research and development activities globally.864 days ago
2196 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
...assemble and often lead to highly fragmented assemblies. The recent developments in long reads sequencing met...from long reads require a high depth of coverage. This motivates the development of hybrid approaches that lev...2099 days ago