Results for "diploid"
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Assembly and diploid architecture of an individual human genome via single-molecule technologies
The research work shows that it is now possible to integrate single-molecule and high-throughput sequence data to generate de novo assembled genomes that approach refer...3236 days ago
- HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assem...
1108 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorph...
2888 days ago
- ...most reads before 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different assembler for metagenomes and heterozygous diploid or polyploid organisms. Use a...
2832 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...effects of linkage can thus be finely explored. A new trait coding for (Bateson-)Dobzhansky-Muller incompatibility loci. Multiple haploid or diploid pairs of incompatible loci ca...2788 days ago
Maq: Mapping and Assembly with Quality
...Download maq, maq-data and maqview at the download page. Copy maq, maq.pl and maq_eval.pl to the $PATH or to the same directory. Simulate diploid reference and read sequences,...2736 days ago
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
While the number of sequenced diploid genomes have been steadily increasing in the...ew years, assembly of highly polymorphic (HP) diploid genomes remains challenging....ves on the state-of-the-art assemblers for HP diploid genomes.2343 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...examples of command line options and best practices for some of these technologies. NOTE: At this time HapCUT2 is for diploid organisms only. VCF input should contain diploid variants. If you use HapCU...2197 days ago
- ...nd 4.2), nevertheless, the users are encouraged to use the latest versions VCFv4.1 or VCFv4.2. The VCFtools in general have been used mainly with diploid data, but the Perl tools aim...
2113 days ago
- HM2 can process any diploid assemblies, but it is especially suitable for diploid assemblies with high heterozygosity (≥3%), which can be difficult for other tools. This pipeline also implements flexibl...
2062 days ago
