Results for "discordant read pairs"
Top-level pages
An algorithm is a computable set of steps to achieve a desired result. W...ch manner that from the outcome we can read a definite answer, "yes" or "...oids recomputing solutions that have already been computed. - The ma.../~jason/hmmlinks.html•http://www.breadf...3948 days ago
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book. In books, we can ex...ives and other people’s lives. Reading can make us more intelligent, updated, imaginative. Without reading we wouldn’t know any...Human Molecular Genetics, Andrew P. Read,...3920 days ago
Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipu...);print}' input.txt OK now here's where to read this stuff properly explained...d some nice explanations of those one-liners. After readi...3914 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The...g-islands-in-vb6/ Fore detail understanding of HMM read this excellent tutorial http:...p://en.wikipedia.org/wiki/Viterbi_path For firther readi...3827 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in...Compression of DNA sequence reads in FASTQ format. Deorowicz &...FASTX-toolkit: FASTQ/A short-reads pre-processing tools Home Pa...n FM-index of the 1.2 billion reads] Readjoiner: a fast and mem...Microindel detection in short-read...3781 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage...hgri.nih.gov/gasp/GemSIM Next generation sequencing read simulator http://sourceforge....MetaSim A tool to generate collections of synthetic reads...3739 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help yo...For knowledge about Linux and their importance amongst bioinformatician plesae read...3707 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data...ages like GenomicRanges, ShortRead, Rsamtools, etc. Documentatio...C-Seq packages including ShortRead, Rsamtools, rtracklayer, Geno...MotIV: Documentation ShortRead The ShortRead package provid...well as the incorporation of read...3627 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and ref...OS X.SHORE - SHORE, for Short Read, is a mapping and analysis pi...lter snps, do statistics for: reads, contigs and snps. Align/A...AST are designed to map short reads generated with the Illumina...of whole-genome shotgun microreads...3521 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run f...en(["fastqc","-f","fastq","-o", "/home/name/result/","/dev/stdin"],stdin=fopen("read....
3551 days ago
