Results for "discordant read pairs"
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Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (th...OURCE=1 -DHAVE_HIDDEN -c -o gzread.o gzread.cgcc -O3 -D_LARGEFILE64_SOURC...look for a library named "libread". jitendra@jitendra-UNLOCK-I.... -I.. -I.. -I../include -I../read -I../alf -I../abi -I../ctf -I...PIC -o scf_dump scf_dump.o ../read/...2232 days ago
- To remove all line ends (\n) from a Unix...e: cat file_list.txt | while read line; do cp "$line" complete_...sets with mapped and unmapped reads: samtools view -F4 sample.b...-f1 < your_file To count reads in a all .fastq.gz files in...$((`wc -l`/4)) To count base pairs in a all .fastq.gz files in y...
2231 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a crucial role in biology...tein-protein interaction sites HOMCOS A server to predict interacting protein pairs and interacting sites by homo...2216 days ago
- $ sudo apt-get install python-numpy pyth...nose[sudo] password for urbe: Reading package lists... DoneBuilding dependency tree Reading state information... DoneT...94157 7321 2195 0 29603 19505 pairs. 17302 passed filtering [88.7...fferent contigs [8.34%]. 1526 pairs. 558 in different contigs [36...
2204 days ago
LINKS scaffolder bloomfilter setting !
...b/perl5/5.22.0/x86_64-linux-thread-multi/CORE/ -fPIC -Dbool=char...b/perl5/5.22.0/x86_64-linux-thread-multi/CORE/ -fPIC -Dbool=char...s, full path to long sequence reads or MPET pairs [see below] (Multi-FASTA/fast...C -d distance between k-mer pairs (ie. target distances to re-s...2165 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple process...sis. One best way is using perl threads and forks. Knowing how these threads and forks work is very impor...wards using perl fork than perl threads. One of the oldest way to f...max_processors);while (my $file = readd...2094 days ago
- It's been a while since I last installed BLAT and when I went to the download directory at UCSC: http://use...irectory blatSrc now move into that directory. #cd blatSrc before you begin read the READM...
2077 days ago
- Follow this: Settings file Error Your web server does not have permission to create th...this message: Welcome Installing Elgg has 6 simple steps and reading this welcome is the first one! If you haven't already...
906 days ago
Short-read assembly using Spades !
If we only had Illumina reads, we could also assemble these using the tool Spades. You can try this...ta as we used above: illumina_R1.fastq.gz: the Illumina forward reads illumina_R2.fastq.gz: the Illumina reverse reads...839 days ago
- Short Read Simulators With the popularity of next-generation se...(NGS) technologies, many NGS read simulators have been develope...ly, many of the popular short read simulators are designed to si...below are some popular short read simulators. Links to their pu...tly, many of the popular long read...
597 days ago
