DendroPy: a Python library for phylogenetic computing
...s. The primary home page for DendroPy, with detailed tutorials and documentation, is at: http://dendropy.org/...ation is available here: http://dendropy.org/downloading.html Documentation Full documentation is availa...2198 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...require prior sequencing of a reference genome: the same sequencing data can be used for the assembly and for the mapping of the reads. A full documentation on the pipeline can be found&...2160 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
...ere an example output file showing the blocks selected from a protein alignment. Further information can be found in the online documentation.2158 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices and tracks. Please take a look at the examples and documentation for a description of the ways that it can be configured to explo...2149 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
...map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including source code, documentation and a user's guide are availa...2177 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
...be held responsible for any damage resulting from the use of this software. The program package, including source codes, executables, and this documentation, is distributed free of charg...2177 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...mine how much content is present in each peak. This README only contains some brief details of how to install and use KAT. For more extensive documentation please visit: https://ka...1975 days ago
mmgenome: Tools for extracting individual genomes from metagneomes
...other binning method", but rather a package to integrate different binning strategies. All functions in the mmgenome R package has associated documentation, check it out in R by e.g.&nb...2089 days ago
NanoPack: visualizing and processing long-read sequencing data
...GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible w...2088 days ago
1998 days ago