Results for "duplicate"
Blogs
BBTools for bioinformatician !
...in=assembly1.fa,assembly2.fa out=merged.fa That will absorb exact duplicates and containments. You can us...lowing the specified number of mismatches or edits).Dedupe can remove duplicate reads from multiple files sim...2283 days ago
Illumina based assembly pipeline steps !
...optional) Variant calling Read alignment (Bowtie 2) Sort and index alignments (SAMtools) Primer sequence removal (iVar; amplicon data only) Duplicate read marking (picard; optiona...890 days ago
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Bookmarks
- ...c for the input selected. Then select one or more output types and add your identifiers in the ID list box. Set the remove duplicate values to 'No' if you do not want duplicates to be removed. Clicking on s...
2907 days ago
Best Practices for Variant Calling with the GATK
...Joel Thibault PDF Video 03/19/15 Introduction to the GATK Geraldine Van der Auwera PDF Video 03/19/15 Mapping, processing, and duplicate marking with Picard tools Ma...1547 days ago
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Pages
Awesome perl frameworks, libraries and software - PART 3
...fectively secure networks small to very large heterogeneous networks. devd/Academic-Writing-Check - check for passive words, weasel words, duplicate words, typographical errors a...2507 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...MUMmer (http://mummer.sourceforge.net/) The mapping short reads called gnumap (http://dna.cs.byu.edu/gnumap/) made to increase the accuracy with duplicate matches. Open source, creates...3532 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...objective of the CLRA is to direct the funds of the Association into the most promising leukemia research projects, and where funding would not duplicate other funding sources. The A...2951 days ago
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Wire posts
News
Update Genome Workbench 2.7.15 released
...enetic Tree Builder Tool: improved diagnostics of errors Multiple Alignment View: optimizations to avoid main GUI freezes Open Dialog: removed duplicate elements in table of genomes...3733 days ago
- ...ments to embedFonts() can now be specified as character vectors, and the defaults have been changed accordingly. Functions in the Summary group duplicate less. (PR#15798) (Unix-alike...
3318 days ago
Opportunity posts
Senior Research Fellow at NIT, Rourkela
...Eligible persons may apply in the prescribed format (available in the Institute Website)affixed with coloured photographs to be submitted in duplicate along with photo copies of re...3580 days ago
Bio-Scripts
Perl script to remove the duplicate sequences from multifasta file
use strict; use Bio::SeqIO; my %unique; my $file = "myseqs.fa"; my $seqio = Bio::SeqIO->new(-file => $file, -format => "fasta"); my $outseq = Bio::SeqIO->new(-...2703 days ago
Remove duplicate lines with perl
#! perl -sw use strict; my %lines; #open DATA, $ARGV[0] or die "Couldn't open $ARGV[0]: $!\n"; while () { print if not $lines{$_}++; } __DATA__ apple apple plum vinegar apple banana banana banana apple2305 days ago
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Comments
- ...ocess optimization and quality control before computational analysis. Essentially, provides three types of quality control: read counts (such as duplicate reads, mapped reads and mappe...
2150 days ago
