BBTools for bioinformatician !
...in=assembly1.fa,assembly2.fa out=merged.fa That will absorb exact duplicates and containments. You can us...lowing the specified number of mismatches or edits).Dedupe can remove duplicate reads from multiple files sim...2283 days ago
Illumina based assembly pipeline steps !
...optional) Variant calling Read alignment (Bowtie 2) Sort and index alignments (SAMtools) Primer sequence removal (iVar; amplicon data only) Duplicate read marking (picard; optiona...890 days ago
2907 days ago
Best Practices for Variant Calling with the GATK
...Joel Thibault PDF Video 03/19/15 Introduction to the GATK Geraldine Van der Auwera PDF Video 03/19/15 Mapping, processing, and duplicate marking with Picard tools Ma...1547 days ago
Awesome perl frameworks, libraries and software - PART 3
...fectively secure networks small to very large heterogeneous networks. devd/Academic-Writing-Check - check for passive words, weasel words, duplicate words, typographical errors a...2507 days ago
Commercial and public next-gen-seq (NGS) software
...MUMmer (http://mummer.sourceforge.net/) The mapping short reads called gnumap (http://dna.cs.byu.edu/gnumap/) made to increase the accuracy with duplicate matches. Open source, creates...3532 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...objective of the CLRA is to direct the funds of the Association into the most promising leukemia research projects, and where funding would not duplicate other funding sources. The A...2951 days ago
Update Genome Workbench 2.7.15 released
...enetic Tree Builder Tool: improved diagnostics of errors Multiple Alignment View: optimizations to avoid main GUI freezes Open Dialog: removed duplicate elements in table of genomes...3733 days ago
3318 days ago
Senior Research Fellow at NIT, Rourkela
...Eligible persons may apply in the prescribed format (available in the Institute Website)affixed with coloured photographs to be submitted in duplicate along with photo copies of re...3580 days ago
Perl script to remove the duplicate sequences from multifasta file
use strict; use Bio::SeqIO; my %unique; my $file = "myseqs.fa"; my $seqio = Bio::SeqIO->new(-file => $file, -format => "fasta"); my $outseq = Bio::SeqIO->new(-...2703 days ago
Remove duplicate lines with perl
#! perl -sw use strict; my %lines; #open DATA, $ARGV[0] or die "Couldn't open $ARGV[0]: $!\n"; while () { print if not $lines{$_}++; } __DATA__ apple apple plum vinegar apple banana banana banana apple2305 days ago
2150 days ago