Results for "efficient"
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...ures; and (3) the development and implementation of tools that enable efficient access and management of diff...ogy searches are the predominant bioinformatics application, and very efficient search methods have been deve...3950 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ubMedCentral SAM format specification file Efficient storage of high throughput se...rmatics 28(4):464 - 469, 2012 PubMedCentral Efficient de novo assembly of large gen...Multiplexed shotgun genotyping for rapid and efficient genetic mapping. Andolfatto e...3782 days ago
List of In-silico Binding Site Prediction Tools
...e shown to achieve a significantly higher mean Matthews Correlation Coefficient (MCC) scores and Binding-site...tterns of physicochemical properties on the protein surface. Using an efficient maximum clique algorithm, the...3747 days ago
Next generation sequencing in R or bioconductor environment
...es for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an advanced environment for efficient sequence management and analy...3627 days ago
Commercial and public next-gen-seq (NGS) software
...Merriman at UCLA.Bowtie - Ultrafast, memory-efficient short read aligner. It aligns...2 to the query sequence. C++ source. ELAND - Efficient Large-Scale Alignment of Nucl...nucleotide Alignment Program). A program for efficient gapped and ungapped alignment...3522 days ago
Software packages for next gen sequence analysis
...rriman at UCLA. * Bowtie - Ultrafast, memory-efficient short read aligner. It aligns...to the query sequence. C++ source. * ELAND - Efficient Large-Scale Alignment of Nucl...ence genome assemblies; in a fast and memory-efficient manner. Robust to INDELs and...3245 days ago
Genome Assembly Tools and Software - PART1 !!
...oftware. OMWare 1.0 – Efficient Assembly of Genome-wide Physi...ssembler is the fastest and most efficient assemblers ever, it can gener...s important task adopting a very efficient strategy. The package integra...goal of SGA is to be very memory efficient, which is achieved by using a...2688 days ago
Single Cell RNAseq data analysis tutorial !!
...eal cell-type-specific expression changes in type 2 diabetes http://genome.cshlp.org/content/early/2016/11/18/gr.212720.116.abstract SCODE: An efficient regulatory network inference...2353 days ago
List of visualization tools for network biology
...http://sbi.imim.es/web/BIANA.php BioLayout Express 3D 2D/3D network visualization http://www.biolayout.org/ BiologicalNetworks Efficient integrated multi-level analys...2291 days ago
Parallel Processing with Perl !
...processors and get the work done quickly? Here is a very simple and efficient technique with perl which i h...uo;s okie too..There are many useful modules which do it for you very efficiently. One really useful module i...2083 days ago
