2307 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization from one genomic location to another through non-homologous recombination. As this movement is me...2303 days ago
PhyloGrapher - Graph Visualization Tool
...tionary relationships within families of homologous genes or proteins (elements). PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements. In general, it is possible t...2259 days ago
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
One code to find them all is a set of perl scripts to extract useful information from RepeatMasker about transposable elements, retrieve their sequences and get some quantitative infor...2171 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...mosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on th...pecial plot viz. the "chromosome heatmap" that, in addition to mapping elements, can visualize the data assoc...1859 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...(http://mulan.dcode.org/), a novel method and a network server for comparing multiple draft and finished-quality sequences to identify functional elements conserved over evolutionary t...2090 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
...terest within the heatmap. This facilitates the investigation of quickly evolving coding regions, novel coding regions, and laterally transferred elements. http://www.putonti-lab.com/...2055 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
...terest within the heatmap. This facilitates the investigation of quickly evolving coding regions, novel coding regions, and laterally transferred elements.2051 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...duces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data, such as the number of elements in the aggregates and interse...1932 days ago
MGERT: Mobile Genetic Elements Retrieving Tool
MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.1823 days ago