Tags: Protein, Sift, Error, FASTA, Server
3131 days ago
How to resolve following Amos installation error ?
make[3]: Entering directory '/home/dept/Tools/amos-3.1.0/src/Align'g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/CelMsg -I../../src/Slice -I../../src/Common -I../../src/AMOS -I../../src/GNU -I../../src/Foundation -g -O2 -MT find-tandem.o -MD -MP -MF .deps/find-tandem.Tpo -c -o fin...Tags: Amos, Minimus2, Assembly, Installation, Error
2828 days ago
How to resolve this "built-in MySQL server cannot run" error in SyMAP ?
I tried SyMAP but got the following error $ ./symap [] Starting SyMAP v4.2 - Project ManagerSyMAP Version v4.2Java Version 1.8.0_91, mem: 1820MBuild 116Reading from file symap.configThe built-in MySQL server cannot run because a MySQL server is already running on this computer. Please s...Tags: Bioinformatics, Error, SyMAP, MySQL
2788 days ago
How to fix following MizBee error
I got the following error while running MizBee.How to fiw it. ./MizBee []OpenJDK 64-...Tags: MizBee, Error, Java
2787 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq fi...Tags: Automatic, Filtering, Trimming, Error, Removing, Quality, Control, fastq, data
2503 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read set, whose error rate is assumed to be small, and ...Tags: Bioinformatics, LoRDEC, Hybrid, Error, Correction, Program, Long, PacBio, Reads, Illumina
2721 days ago
How to resolve following error in MIRA?
Looking for files named in data ...Pushing back filename: "clean_a2017.R1.fq"Could not determine filetype from data 'clean_Avaga2017.R1.fq' ("clean_a2017.R1.fq")Pushing back filename: "clean_a2017.R2.fq"Could not determine filetype from data 'clean_a2017.R2.fq' ("clean_a2017.R2.fq")Fatal error (m...Tags: Bioinformatics, MIRA, Error, Filetype
2705 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting substitution errors, we locate and correct insertion, deletion, and homopolymer err...Tags: Pollux, Platform, Independent, Error, Correction, Single, Mixed, Genomes
2681 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150 bp) reads at a low cost. Even with low (advertised 1%) error rate, 100 × coverage Illumina data on average has an error in some read at every base in the genome. These errors make ha...Tags: QuorUM, Error, Corrector, Illumina, Reads
2508 days ago