LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of handling SV events. It is well-suited to align long read...2177 days ago
2128 days ago
Genome U-Plot: a whole genome visualization
...raphs that allows researchers to generate novel insights and hypotheses by visualizing SVs such as deletions, amplifications, and chromoanagenesis events. The main features of the Gen...2118 days ago
2041 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
...or up to a few thousand nodes and edges interactivity controls (highlight, collapsed nodes, selection, zoom, physics, movement of nodes, tooltip, events, …) visualize rp...1938 days ago
1940 days ago
1926 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...only used features, such as taxonomic information, gene names and identifiers, branch lengths, support values, and gene duplication and speciation events. Using these standardized ele...1605 days ago
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies
...LT, ART-DeCo, and DeClone. In a few minutes, DeCoSTAR can reconstruct the evolutionary history of domains inside genes, of gene fusion and fission events, or of gene order along chrom...1579 days ago
Genome in a Bottle (GIAB) Consortium
...s, reference methods, and reference data) to enable translation of whole human genome sequencing to clinical practice. https://www.nist.gov/news-events/news/2016/09/nist-releases-ne...1557 days ago