Results for "exact"
Blogs
BBTools for bioinformatician !
...-based). Code: $ kmercountexact.sh in=trimmed.fq out=counts.t...read", which will require an exact prefix match, though you can...on the other hand, gives you exactly 1x depth and exactly 100% c...ions, and Ns per read, either exactly or probabilistically; the l...2286 days ago
Frequently used bioinformatics tools for viral genome analysis !
...., Debudaj-Grabysz, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Kraken: ultrafast metagenomic sequence classification using exact alignments. Wood, D. E. &...1062 days ago
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Bookmarks
- ...centromere locations for each chromosome in 14 different yeast species. For yeasts with large centromeres (e.g., S. pombe) Centurion predicts the exact centromere locations. For sev...
3020 days ago
- ...f you do not want duplicates to be removed. Clicking on submit then returns a table of your inputs matched against all the outputs selected in the exact order as entered. Results can...
2909 days ago
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Pages
Frequent words problem solution by Perl
...which have matching valuesforeach my $name (keys %myHash){ print "$name " if $myHash{$name} == $max;}sub kmerMatch { #Check the exact matching kmers with sliding w...3268 days ago
Pattern Matching Problem Solution with Perl
...warnings;my $string="GATATATGCATATACTT";my $subStr="ATAT";my $kmer=length($subStr);kmerMatch ($string, $subStr, $kmer);sub kmerMatch { #Check the exact matching kmers with sliding w...3268 days ago
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Top-level pages
Next generation sequencing in R or bioconductor environment
...nction as introduced above. Documentation Differential Gene Expression Analysis with edgeR The edgeR package uses empirical Bayes estimation and exact tests based on the negative b...3640 days ago
Commercial and public next-gen-seq (NGS) software
...and Alignment by Hashing Algorithm) is a tool for rapidly finding near exact matches in DNA or protein dat...absent from previous genome assemblies. Broad Institute. Edena - Edena (Exact DE Novo Assembler) is an asse...3534 days ago
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Professor / Associate Professor / Assistant Professor / Lecturer at IIIT Hyderabad
...puter Aided Structural Engineering (CASE), Computational Natural Sciences, Bio informatics, Computational Linguistics, IT and social development, Exact Humanities, etc., IIIT-H prov...3051 days ago
Bio-Scripts
Clump Finding Problem Solved with Perl
...my $name (keys %myHash){ print "$name " if $myHash{$name} == $clump; } kmerMatch ($string, $subStr, $kmer); sub kmerMatch { #Check the exact matching kmers with sliding w...2349 days ago
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2140 days ago
Tags
STELLAR: fast and exact local alignments
STELLAR is very practical and fast on very long sequences which makes it a suitable new tool for finding local alignments between genomic sequences under the edit distance model. Binaries are freely available for Linux, Windows, and Mac OS X at http://www.seqan.de/projects/stellar.Tags: STELLAR, fast, exact, local, alignments
2091 days ago
Comments
Comment on "Calling variants in non-diploid systems"
...in pooled samples where the number of samples is not known. This is the exact scenario we have here: in our...tiple mitochondrial (or bacterial or viral) genomes, but we do not know exactly how many. Thus we will use...1059 days ago
Comment on "Sibelia: A comparative genomics tool"
...ou also may be interested in blocks that occur exactly once in each input sequenc...--sharedonly Output only blocks that occur exactly once in each input sequence...n. As you may notice, the algorithm relies on exact K-mers shared between the gen...1300 days ago
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