Results for "existing"
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools used for bench-marking....1150 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...est neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool....1150 days ago
- I bet, this website will be your best friend in near future. This helps us to explore the existing open source codes and learn from it. You can find some useful open source bioinforma...
3920 days ago
- ...genomic and epigenomic features, and on comparative studies. It uses simple input and output formats and can therefore easily be integrated into existing workflows or combined with al...
3009 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to support the cycle of package development. With d...2928 days ago
- ...ucial for genetic innovation and the evolution of genome architecture. Existing HGT detection algorithms rely...y probable horizontally acquired genes. We then compared the method to existing HGT detection tools using a l...
2878 days ago
CISA: Contig Integrator for Sequence Assembly
...f superior contiguity and accuracy, compared with the assemblies generated by the state-of-the-art assemblers and the hybrid assemblies merged by existing tools. This tool is implement...2702 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2628 days ago
- ...as larger scaffolds. AMOS-Hybrid is a pipeline written in the AMOS framework (open-source assembly tools) to merge arbitrary mated reads into an existing assembly and merge contigs an...
2545 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...xpectation-maximization procedure and an unconstrained binary quadratic programming approximation of the original problem. We compared GRASS with existing HTS scaffolders using Illumin...2543 days ago
