Results for "families"
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Ensembl comparative genomics resources
...which large-scale synteny, per-base conservation scores and constrained elements are obtained. Gene alignments are used to define Ensembl Protein Families, GeneTrees and homologies for...3005 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing tool...2966 days ago
- ...mand line arguments which are described in the release notes. The "ped" argument has no effect in version 4.1. If your data contains nuclear families and you want to model the par...
2763 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...N provides a subfamily classification of the existing CAZyme families based on sequence similaritie...CAN is updated regularly when CAZy database created new families based on latest literature.2549 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements). PhyloGrapher is a drawin...2266 days ago
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
...bled into copies automatically or manually Allow for working with a TE user-defined library Allow for working with only a user-chosen set of TE families http://doua.prabi.fr/sof...2178 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...ient algorithm that identifies CSBs in large genomic datasets. The discovered CSBs are ranked according to a probabilistic score and clustered to families according to their gene conte...2035 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...arity pairs as edges of a network. A very efficient algorithm, based on the Disjoint Sets Data Structure, allows the computation of sequence families with low time and space...1987 days ago
- Cogent is a tool that identifies gene families and reconstructs the coding genome using high-quality transcriptome data without a reference genome, and can be used to check a...
1799 days ago
RepeatModeler2: automated genomic discovery of transposable element families
RepeatModeler2 represents a valuable addition to the genome annotation toolkit that will enhance the identification and study of TEs in eukaryotic genome sequences. Repe...1632 days ago
