FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...s branch expansion in a greedy way taking the symbols from the given pair of sequences (protein or nucleotide) and results in an optimal alignment faster than conventional dymanic pro...2339 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
...sands of genome interval files. GIGGLE (https://github.com/ryanlayer/giggle) scales to billions of intervals and is over three orders of magnitude faster than existing methods. Its sp...2306 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its...2235 days ago
2151 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
...For example, on a 32-thread computer with 2.0 GHz CPU , MECAT takes 9.5 days to assemble a human genome based on 54x SMRT data, which is 40 times faster than the current PBcR-Mh...2185 days ago
LAMSA: fast split read alignment with long approximate matches
...e Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of han...equencing error rates, the results demonstrate that it is substantially faster than the state-of-the-art lon...2181 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...accurate alignment for huge amounts of short reads generated by Illumina/Solexa Genome Analyzer. Compared to soap v1, it is one order of magnitude faster. It require only 2 minutes al...2173 days ago
AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...50, MiniSeq...and other Illumina 1.8 or newer formats The author has reimplemented this tool in C++ with multithreading support to make it much faster. The new tool is called fastp...2136 days ago
Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
...sensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and ...2024 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finder available - see the figure and the table below. In recent rice genome sequencing projects, it w...1962 days ago