Results for "folder"
Bio-Scripts
...ll -y expat-devel openssl-devel mysql-devel libxml2-devel # Create a folder where you want to install dif...ent Perls, and cd into it: # Note that it doesn't need to be your home folder. Put it wherever you want to...2142 days ago
- #!/usr/local/bin/perl -w # Can be easily modified to run any command on every sequence in a folder # Directory of sequences $myDir = "/home/anjana/seqs"; # Output directory (r...
2914 days ago
- ...oad and install the compiler, you need to open the cmd, navigate to the folder containing the .cpp files usi...ou want to name each exe file. The exe files will appear in the same folder.
848 days ago
Perl script to find missing and move to desire folder
#!/usr/bin/perl -w use strict; use warnings; open(my $ids, "2237 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, download the python source and extract it mkdir ~/python cd ~/python wget https://www....2096 days ago
To convert just one specific read group to fastq
...st N elements. Keep only valid SRR numbers. cat runinfo.txt | cut -f 1 -d , | grep SRR | head -$N > selected.txt # Store the data in the reads folder. mkdir -p reads # Downloa...1540 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...*.tar.gz; do tar xzf $a; done #Out of the directory cd .. else echo -e "exists \t blastDB, If not installed sucessfully, delete the folder and re-run it" fi echo -e...1159 days ago
Commands to transfer files and folder in docker !
#To copy files between host machine and container (execute the commands on host, not inside container): $ docker cp FILE_OR_FOLDER_ON_HOST CONTAINER_ID:/CONTAINER_DIRECTORY #or $ docker cp CONTAINER_ID:FILE_OR_FOLDER_IN_CONTAINER HOST_DIRECTORY983 days ago
Extract all fasta sequences except ids !
...i_kmer19_formated.fa > omi_kmer19_formated_numbered.fa # cat all *.rd file cat *.rd > all_reads_hits #count the lines in each file -- go in folder for FILE in *; do wc -l $FIL...826 days ago
- ...on to specify where this environment should be stored. We will also make a symlink so the executable downloaded is available directly from our bin folder. To run GATK we must first st...
810 days ago
