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OPERA : Optimal Paired-End Read Assembler
...technologies (PacBio or Oxford Nanopore). The manuscript describing the new features and algorithms is available at Genome Biology. We look forward to getting your feedback to i...2808 days ago
- ...axonomically classify DNA sequences, can accurately classify reads as short as 100 bp. Its accuracy for short reads represents a significant leap forward over previous composition-bas...
2777 days ago
- ...e is chosen.The algorithm is as follows:1.Find the positions where the forward and reverse primers match bes...uding the primer.2.Pick and overlap to maximise the probability of the forward and reverse reads having come...
2672 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...e Sciences. “At Strand, we are continuously working towards improving the accuracy and efficiency of NGS data analysis. Customers can look forward to Strand NGS becoming availa...2399 days ago
- ...al will be referred to simply as “Species” since it is live data. This data is paired-end data, meaning that there are forward and reverse reads, which we w...
2570 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, supports b...2059 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
Miniasm is a great long-read assembly tool: straight-forward, effective and very fast. However, it does not include a polishing step, so its assemblies have a high error rate &nd...1628 days ago
- Generate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted of k-mer keys (i.e. ATCGATCCTTAAGG) that are only presented in one contig, but not presented in any other contigs (for both forward and reverse strands).
889 days ago
UniqueKmer: Generate unique KMERs for every contig in a FASTA file
...ue k-mer is consisted of k-mer keys (i.e. ATCGATCCTTAAGG) that are only presented in one contig, but not presented in any other contigs (for both forward and reverse strands). This t...883 days ago
