GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.htmlFeatures Map...2521 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangeme...2478 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...oisy reads, they do not have a correction or consensus step, and therefore the resulting assemblies are contiguous (i.e. long) but very noisy (i.e. full of errors) We start with an...2348 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ng on unique software architecture, PLAST takes full advantage of recent multi-cor...providing highest quality results, Contains a fully integrated data filtering en...n. It is easy to install, cost-effective, takes full advantage of multi-core proce...2344 days ago
Bandage: interactive visualization of de novo genome assemblies
...binaries are freely available at https://github.com/rrwick/Bandage. Bandage is implemented in C++ and supported on Linux, OS X and Windows. A full feature list and screenshots...2341 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome...2317 days ago
Mobyle: a new full web bioinformatics framework
Mobyle, to provide a flexible and usable Web environment for defining and running bioinformatics analyses. It embeds simple yet powerful data management features that...2307 days ago
mojolicious: a next generation web framework for the Perl programming language.
...u to discover. A powerful web development toolkit, that you can use for all kinds of applications, independently of the web framework. Full stack HTTP and WebSocket clie...2302 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
...Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://genome.cshlp.org/content/27/5/747.full An ipython notebook to r...2276 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein sequence sets. MMseqs2 is open source GPL-licensed software imple...2233 days ago