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Results for "genetic"

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• • Rahul Nayak@rahul

  

  kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity

  The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to calculate the genetic dissimilarity between samples without any reference genome, and without assembling one.   ...

  Tags: kWIP, k-mer, weighted, inner, product, de novo, estimator, genetic, similarity

  2166 days ago

• • Jit@jit.aber

  

  DeepVariant : an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant relies on ...

  Tags: DeepVariant, analysis, pipeline, deep, neural, network, genetic, variants, next-generation, DNA, sequencing, data

  1560 days ago

• • Jit@jit.aber

  

  Chromonomer: a tool set for repairing and enhancing assembled genomes through integration of genetic maps and conserved synteny

  Chromonomer is a program designed to integrate a genome assembly with a genetic map. Chromonomer tries very hard to identify and remove markers that are out of order in the genetic map, when considered against their local assembly order; and to identify scaffolds that have been incorrectly assemb...

  Tags: Chromonomer, tool, repairing, enhancing, assembled, genomes, integration, genetic, maps, conserved, synteny

  1537 days ago

• • Rahul Nayak@rahul

  

  Flanker

  Flanker, a Python package which performs alignment-free clustering of gene flanking sequences in a consistent format, allowing investigation of mobile genetic elements (MGEs) without prior knowledge of their structure. Flanker can be flexibly parameterised to finetune outputs by charact...

  Tags: Flanker, Python, mobile, genetic, elements, HGT, genome, genes

  1161 days ago

• • Abhinav@abhinav

  

  GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes

  A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one or several taxa and provide one or several reference protein(s). Genomes and plasmids (based on user choice) will be downloaded from the NCBI Assembly/NR database and searched for ...

  Tags: GEnView, phylogeny, comparative, genomics, software, analyze, genetic, environment, genes

  857 days ago

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