Results for "genome announcements"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in p...uencing errors. Kelley et al, Genome Biol 11(11):R116, 2010. PubM...ent de novo assembly of large genomes using compressed data struct...software package] Comparing genomes and assemblies; variant dete...3783 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodified fo...nformation about biological sequences collected from the environment. GenomeSpace http://www.genomespace.o...3760 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief desc...LF A Simulation Framework for Genome Evolution http://www.cbrg.eth...on test bed for hypotheses of genome evolution http://acb.qfab.org...ts/gametes/?source=navbarGASP Genometric Analysis Simulation Progr...3740 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis..., rtracklayer, GenomicFeatures and BSgenome. Compared to the IRange...or SNP analysis: snpMatrix BSgenome BSgenome provides an object...the biomaRt, IRanges, Biostrings, BSgenome, GO.db...3628 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and refer...uences produced on a Illumina Genome Analyzer. A suite created by..., such as the human reference genome. By default, BWA finds an ali...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...3522 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annota...3552 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the...COSMIC, KEGG, PubMed, SymAtlas, UCSC genome browser, Pathway Commons, Gen...m/us/app/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first han.... SimGene alsocontains an integrated genome browse...3545 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of B...ar National Institute Of Immunology, New Delhi National Centre For Plant Genome Resear...2574 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and ref...uences produced on a Illumina Genome Analyzer. A suite created by...f Nucleotide Databases. Whole genome alignments to a reference gen...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...3246 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins ex...azusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome.jp/keg...2290 days ago
