Results for "genome assembly"
Bookmarks
This tutorial includes resources for learning more about PacBio data and bioinformati...inars) Bioinformatics Training Slides Specialized Applications: De Novo Assembly Transcriptome analysis Base...2639 days ago
- ...e package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the...te-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the ou...
2831 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical...for the creation of high-quality, detailed circular maps of organellar genomes like the plastid genome (...
2831 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to id...f the post-treatment depends on the availability of a reference genome/t...
2831 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1237 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo asse...alization and quality assessment of de novo genome assemblies Citation This so...alization and quality assessment of de novo genome a...
2823 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M...ll. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome B...
2822 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of d...approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE wi...prediction of initial exons in most cases. http://genome.c...
2821 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on p...rates (Ka, Ks and Ka/Ks) between a well-annotated genome and a non-annotated genome or...taset. It is especially useful for newly sequenced genomes...
2818 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSB...EBRs (shared by pigs and cattle) were detected using the pig and human genomes...2745 days ago
