Results for "genome browser"
Top-level pages
Tools for bacterial whole genome annotation
...y useful if you have loads of genomes or need to annotate a pangen..., as well as other functional genome units such as structural RNAs...or annotating fully sequenced genomes. PAGIT: Provides a toolkit...e viewed in the Apollo genome browser; this feature of MAKER provid...2345 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome...2328 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a ci...tion networks http://tinyurl.com/navigator1/ N-Browse Interactive graphical browser for biological networks http...2302 days ago
List of visualization tools for genome alignments
...d publication ready figure of genomes. Following are the list of genome alignment visualization tools...on information of a reference genome http://bioi...http://wanglab.ucsd.edu/star/browser SVA Software for anno...d visualizing sequenced human genomes http://www.svaproject.org V...2297 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alig...ab/data/LTR_Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...mer.sourceforge.net/ REPuter http://www.genomes...2288 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...r will give an overview of the workflow which includes Transcriptome/ Genome alignment, Differential expre...correlation, clustering, Venn diagrams, CVA, UMI support and elastic genome browser used in RNA-Seq workflow that...2278 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material betw...NA must enter the host nucleus, integrate into the genome, and in more complex organism...otential for genetic incompatibility with the host genome...864 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bio...assembly of the European eel genome from nanopore sequencing read...-scale scaffolding of de novo genome assemblies based on chromatin...ed on the FMD-index for large genomes https://github.com/lh3/ferm...2255 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing stud...ingle‐nucleotide variants as well as insertion/deletions variants in the human genome&...2217 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-note...##[Mon May 7 11:29:18 2018] Reduction...#file name genome size contigs heterozygous siz...May 7 11:29:35 2018] Final reduction...#file name genome...
2204 days ago
