2948 days ago
2948 days ago
2941 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is impor...al sequence manipulation Mapping reads to a reference genome Man...ulating SAM/BAM alignment files Visualizing data in a genome b...2941 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a specia...2941 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation...notate bacterial and archaeal genomes. It works by offering a stan...ifying and annotating genomic features as well as the ability to add...dates the batch submission of genomes and the ability to customize a...2939 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient...nd of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes)...2938 days ago
2777 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences...used in the search step (as provided for example by iedera). Main features of YASS are: multiple, possibly overlapping seeds and a new hit criter...2934 days ago
2927 days ago