Results for "genome overlapping features"
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Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous d...yashi T, Itoh T, “Efficient de novo assembly of highly heterozygous genomes from whole-genome s...2924 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then...served order and orientation of features, such as protein coding gen...time for aligning two bird-size genomes (~1...& Lindblad-Toh, K. (2010). Genome-wide synteny through highly sen...2924 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) e...mongst others) in quality control of de novo genome assembly or identification of structural variation in a genome r...2916 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uni...cing technologies, low-coverage and exome) in the 1000 Genomes...2916 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome....
2916 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64...help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.u...2915 days ago
- This histone database can be used to explore the diversity of histone proteins and their...etter understand how sequence variation may affect functional and structural features of nucleosomes. To get starte...
2903 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisul...resolution data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-genome b...
2903 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome asse...verage plots (TAGC plots) to visualise the contents of genome a...
2893 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assem...assembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that genome i...
2892 days ago
