Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins exer....kazusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome....2296 days ago
2722 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...pool or individual NGS data, reports overall p-value, operating s...SnpEff Input: BAM Reference Genome: FASTA indexed with SAMtools f...alf, CNV file -cnv Reference genome: -refgene (created in MATLAB,...uo;This application generates reports on inherited mutations in fiv...2917 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive...ave been copied to another region of the genome.Interspersed RepeatsProcessed...es which have been reintegrated into the genome...2220 days ago
2878 days ago
Genome Assembly Tools and Software - PART1 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. TriMetAss 1.2 – Th...bly for manual inspection. It reports mis-assemblies and other war...Phusion 2.1c – Assembly Genome Sequences from Whole Genome Sh...2694 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends...concordant if they can be mapped to the reference genome as “expected”: (a...sp;a read that can only be mapped to the reference genome...2531 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and...s for the German tax office from Apple's financial reports. plicease/FFI-Platypus ...ort-parser - A Perl based tool to parse DMARC reports from an IMAP mailbox or from...2498 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...SNPs (dbSNP and Affymetrix's Genome-Wide Human SNP Array) from ra...., ONT or PacBio reads, draft genomes) Software (Perl) https://g...p://clark.cs.ucr.edu/ FOCUS Reports organisms present in metagen...ol for MLST directly from the genome sequencing reads Software (Py...2380 days ago
2360 days ago