GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to...2678 days ago
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DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...imally scoring chains of ordered gene pairs are computed and reported. This algorithm can be used to mine large evolutionary conserved regions of genomes between two organisms. Altern...2648 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...4 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. ----- PBHoney -----Read...2638 days ago
YASRA: Reference based assembler
...tive assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes makes use of LASTZ (Harris et...2636 days ago
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