Results for "genomes"
Top-level pages
Software packages for next gen sequence analysis
...yzer. A suite created by the 1001 Genomes project. Source for POSIX. *...ments. A tool created by the 1001 Genomes project. Source for POSIX. *...technology, back to the reference genomes, and carry out post-analysis....RNA-Seq reads to mammalian-sized genomes using the ultra high-throughp...3241 days ago
Comprehensive list of visualization tools for biological pathways
...ourceforge.net/Site/JDesigner.html KaPPA View Plant pathways http://kpv.kazusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome.j...2285 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...nce Haplotypes: Links to 1000 Genomes and HapMap downloads Output:...sion should work with diploid genomes Input: requires BAM files (a...mal-tumor pair and two parent genomes; quantifies descent-by-modifi...ata from ClinVar, dbSNP, 1000 genomes (plus many other external sit...2907 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Exp...2209 days ago
- ...e Referencesequence/genome A fully assembled version of a genome that can be used for mapping short DNA sequence reads for comparisons of genomes from various individuals Cov...
2867 days ago
Genome Assembly Tools and Software - PART1 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. TriMetAss 1.2 – The...nabled discovery in microbial genomes, large eukaryotic genomes, di...specifically intended for metagenomes. Contiguity 1.0.4 &ndash...2684 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...with error-containing long sequence (e.g., ONT or PacBio reads, draft genomes) Software (Perl) https://gi...LARK Taxonomic classification of metagenomic reads to known bacterial genomes using k-mer search and L...2369 days ago
Tools for bacterial whole genome annotation
...y useful if you have loads of genomes or need to annotate a pangeno...notate bacterial and archaeal genomes (chromosomes and plasmids)....fferent annotations of single genomes. The extended annotation assi...ission-ready, annotated draft genomes. MyPro installed as a virtual...2330 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, hum...2313 days ago
List of visualization tools for genome alignments
...s to better results. But sometime, we need publication ready figure of genomes. Following are the list of ge...er SVA Software for annotating and visualizing sequenced human genomes http://www.svaproject.org V...2282 days ago
