3271 days ago
3423 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX) ggplot2 (from R prompt type install.packages("ggplot2","proto","xtable")) Perl Option...2710 days ago
A guide for complete R beginners :- Installing R packages
.... Let’s suppose you want to install the ggplot2 package. Well nothing could b...up an R shell and type:> install.packages("ggplot2") In theory the package shou...age we use the command:> install.packages("ggplot2", lib="/data/Rpackages/")>...3364 days ago
Awesome perl frameworks, libraries and software - PART 3
...called Logitech Media Server weijianwen/SJTUThesis - XeLaTeX templates for Shanghai Jiao Tong University (SJTU) thesis hadley/ggplot2-book - The ggplot2 book irssi/scripts.irssi.org...2500 days ago
Next generation sequencing in R or bioconductor environment
...Map SplitSeek DNA-Methylation Data Analysis methylPipe bsseq BiSeq Much more under BiocViews HT-Seq Data Visualization ggbio: ggplot2 extension for genomics data (...3631 days ago
2475 days ago
Plot the clock using Lastz -gerenal outfile
use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my $R = Statistics::R->new() ; $R->startR...2305 days ago
Comment on "Which of the following programming language is best for a bioinformatics beginner?"
...ecommended as many new good tools made recently in python. R is good for downstream analysis like doing statistical analysis, create fancy graphs(ggplot2), work with rnaseq data (Dese...3537 days ago