Results for "git"

Bio-Scripts

  • BloomFilter

    ➜ Tools git:(master) ✗ git clone git://github.com/bcgsc/bloomfilter.git...nthash.hpp ➜ bloomfilter git:(master) swig -Wall -c++ -per.../bloomfilter' ➜ bloomfilter git:(master) ✗ pwd /home/urbe/To.../bloomfilter' ➜ bloomfilter git:(master) ✗ pwd /home/urbe/...

    2162 days ago

  • Running Trinity on RNA-seq !

    ➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_memory 250G --left /media/urbe...Trinity is Trinity-v2.7.0-PRERELEASE, and can be obtained at: https://github.com/trinityrnaseq/trinityr...

    2138 days ago

  • Fastq-dump for SRA download

    ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./fastq-dump [options] INPUT -A|--accession Replaces accession deriv...

    2137 days ago

  • Installing Porechop on Ubuntu !

    ➜ Tools git:(master) ✗ git clone https://github.com/rrwick/Porechop.git Cloning into 'Por...ne. Checking connectivity... done. ➜ Tools git:(master) ✗ cd Porechop ➜...ript to /home/urbe/anaconda3/bin ➜ Porechop git:(master) porechop -h usage:...

    2117 days ago

  • Installing NextSV on Ubuntu !

    ➜ Tools git:(master) ✗ git clone https://github.com/Nextomics/nextsv.git...led argparse-1.4.0 ➜ nextsv git:(master) pip install pysam...################ ➜ nextsv git:(master) ✗ sh install_sniffle...Sniffles finished ➜ nextsv git:(master) ✗...

    2109 days ago

  • Update zsh on Ubuntu !

    ...completed with 127 local objects. From https://github.com/robbyrussell/oh-my-zsh...| 2 +- plugins/git-extras/README.md...pt.plugin.zsh | 2 +- plugins/git-prompt/gitstatus.py...

    2085 days ago

  • Installing pb-assembly on Linux !

    ...module-git cURL/7.49.1-foss-2016a...PROJ/4.8.0-goolf-1.4.10 git/2.2.2...# # https://github.com/PacificBiosciences/pbb...

    2045 days ago

  • Test bp-assembly !

    ...ovo_asm) [jnarayan@hmem00 ~]$ git clone https://github.com/cdunn2001/git-sym.git fatal: destination path 'git-sym' already exists and is no...@hmem00 ~]$ git clone https://github.com/pb-cdunn/FALCON-exampl...j/n/jnarayan/FALCON-examples/.git/git-sym-local/links' -> in d...

    2045 days ago

  • Installing nupack3.0.6

    #http://www.nupack.org/downloads/source ➜ tools git:(master) ✗ cd nupack3.0.6 ➜ nupack3.0.6 git:(master) ✗ make make -C src/ make[1]: Entering directory '/home/urbe/Tools/nupack3.0.6/nupack3.0.6/src...

    2037 days ago

  • Install HTSLIB on Ubuntu !

    ➜ Tools git:(master) ✗ wget https://github.com/samtools/htslib/releas...018-10-25 13:36:41-- https://github-production-release-asset-2...[1178859/1178859] ➜ Tools git:(master) ✗ tar -vxjf htslib-1...tslib-1.9/configure ➜ Tools git:(master) ✗ cd htslib-1.9 ➜...

    2030 days ago