Results for "go"
Bio-Scripts
#use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use Archive::Extract; # # First, check if all the required modules have been installed in t...1155 days ago
- (JitMetaENV) ➜ setu git:(master) ✗ conda install -c bioconda ragout Collecting package metadata (current...############################################################### | 100% ragout-2.3 | 2.8 MB |...
1145 days ago
Python script to download covid genome !
...s import yaml seqs = yaml.load(requests.get("https://www.ncbi.nlm.nih.gov/core/assets/genbank/files/ncov-sequences.yaml").text) seqs = seqs['genbank-sequences'] print("got %d sequences" % len(seqs))...1133 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment: failed with...
1051 days ago
- ...c-7-locales libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1...ubuntu bionic/main amd64 libalgorithm-merge-perl all 0.08-3 [1...bionic/main amd64 libharfbuzz-gobject0 amd64 1.7.2-1ubuntu1 [1...ously unselected package libalgorithm-merge-perl. Preparing t...
1051 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1051 days ago
List of string comparison algorithms !
String comparison: Levenshtein Distance Damerau-Levenshtein Distance Jaro Distance Jaro-Winkler Distance Match Rating Approach Comparison Hamming Distance More at https://jellyfish.readthedocs.io/en/latest/comparison.html979 days ago
Tadpole is 250x faster than SPADes assembler !
...kmer counts. reassemble=t If ecc is enabled, use the reassemble algorithm. pincer=f If ecc is enabled, use the pincer algorithm. tail=f If...973 days ago
Perl script for Smith-Waterman Algorithm
# Smith-Waterman Algorithm # usage statement die "usage: $0 \n" unless @ARGV == 2; # get sequences from command line my ($seq1, $seq2) = @ARGV; # scoring scheme m...947 days ago
- ...-d Database [String] default = nr -i Query File [File In] default = stdin -A Multiple Hits window size (zero for single hit algorithm) [Integer] default...
947 days ago
