MSAProbs - Parallel and accurate multiple sequence alignment
MSAProbs is a well-established state-of-the-art multiple sequence alignment algorithm for protein sequences....-memory systems using MPI to overcome high memory overhead barrier and achieve good par...1766 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and accurate reference...f this tool is on practicality and therefore has the following features: Good per...1657 days ago
WOS-C Women Scientist Scheme KIRAN-IPR
Women Scientist Scheme WOS-C is one among the most coveted programs that Women Scientists in India apply for. It...s for a year, this, in turn, allows them to even work from home and maintain a good wor...1595 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Reference free SNP search for comparative population genomics: multiple samples run simultanously. **experimental...parallel mode using graph decomposition then use filtering method to generate good qua...1564 days ago
Tadpole: an assembler, error-corrector, and read-extender
Tadpole is a kmer-based assembler, with additional capabilities of error-correcting and extending reads. It does...complicated graph analysis or scaffolding, and therefore, is not particularly good for...1556 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with c...1509 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its curr...time and energy needed to build software workstations and it can also act as a good tea...1452 days ago
parallelLastz: Lastz with multi-threads support.
Running Lastz (https://github.com/lastz/lastz) in parallel mode. This program is for single computer with multiple core processors...1357 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleot...he software is designed to run on multiple cores and servers and exhibits very good sca...1208 days ago
Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the se...man mitochondrial DNA although the same approaches will work equally good on...1048 days ago