3948 days ago
3948 days ago
Best book Titles for Learning Bionformatics
...Methods in Enzymology Volume 303), S.M. Weissman (Editor), 1999, Academic Press Systems Biology, Genetic and Biochemical Network Handbook of Graphs and Networks : From the Genom...3919 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...et al., Bioinformatics 27(13):i137-41, 2011. PubMedCentral De novo assembly Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Zerbino & Birney, Genome...3781 days ago
A guide for complete R beginners !
...to the basics of R, focusing on a few common tasks that biologists need to perform some basic analysis: load a table, plot some graphs, and perform some basic stati...3363 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...n reads: FASTA Output: 2Kplus2 Description: algorithm searches graphs produced by de novo assembler...ssification of single nucleotide polymorphisms in transformed De Bruijn graphs using Cortex assembler.&rdquo...2910 days ago
Genome Assembly Tools and Software - PART1 !!
...ing a graph structure combining both de Bruijn graphs and protein HMMs. The inclusi...age v0.7.1 – Navigating De novo Assembly Graphs Easily Bandage is a progra...ndash; Transcript Assembly by Mapping Reads to Graphs TAG is a tool for metatran...2687 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...mutations; algorithm uses k-mers and is based on colored de Bruijn graphs) Software (Python) http://g...uences and the distances between them based on assembly using de Bruijn graphs and Bray–Curtis dissimi...2373 days ago
List of visualization tools for network biology
...of biochemical processes http://cellpublisher.gobics.de/ Graphle Distributed network exploration and visualization of interactive large, dense graphs http://tinyurl.com/graphle/...2290 days ago
Bioinformatics tools for genome assembly !
...and multi-cell bacterial genomes, as well as small eukaryotic genomes. ABySS: A parallelized assembler for large genomes that uses de Bruijn graphs. Velvet: Another de Brui...288 days ago