2888 days ago
Genome Assembly Tools and Software - PART1 !!
...itable for comparison. DNA Baser 4.36 – DNA Sequence Assembly & Analy...slation for either RNA-seq or DNA-seq SOLiD assemblies....Sequencher 5.4.1 – DNA Sequence Assembly and Analysi...hasing genomic variants using DNA sequencing reads, also called...2705 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in...ly reflects evolutionary history. cDNA -- Complementary DNA; DNA that is synthesized, by...sequence isolated at random from a cDNA library, used for identificat...o with any other clade. repetitive DNA -- Sequences of DNA that are...2481 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final r...ttp://www.sanger.ac.uk/resources/software/artemis/ DNannotator Annotation web...onal genomic sequences http://bioapp.psych.uic.edu/DNannotator.htm JVM Java...2303 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual moveme...a eukaryotic species to gain a gene by HGT, foreign DNA must enter the host nucleus,...e donor and the host. Over the longer term, foreign DNA may become “domesticate...869 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads...tive dot plot for genome-genome alignments https://dnanexus.github.io/dot/ Zoho Acco...cation — an evolutionarily conserved role for DNA inverted repeats in the genom...2261 days ago
2264 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental inve...dquo;Evaluation of the diseaseācausing potential of DNA sequence alterations”...hat would have occurred if the element were neutral DNA, but did not occur because th...2222 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a...on with an empirical scoring function Other Sites (DNA, RNA, Metals) CHED We...ter A knowledge-based method for the prediction of DNA-protein interactions DISPLAR...2221 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open source,...hich make it easy to manipulate strings of characters (for example, strings of DNA bases and protein amino acid...2202 days ago