Results for "hits"
Users
About me: ...number of services developed/maintained from a single group in the world). These services are heavily used by scientific community, nearly 100,000 hits per day. Group published more...3498 days ago
Blogs
BBTools for bioinformatician !
...ame sensitivity as BBMap by adding the flags "minid=0.76 maxindel=16k minhits=1". With those parameters it...this percentage had never been seen before". In this mode, once the line hits zero, sequencing more is not...2274 days ago
Bookmarks
- ...E tool provides a method to view the tissue specific regulatory component of a set of EWAS DMPs. eFORGE analysis takes a set of DMPs, such as those hits above genome-wide significanc...
2749 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...of sequences comparisons while providing highest quality results, Contains a fully integrated data filtering engine capable of selecting relevant hits with user-defined criteria (E...2351 days ago
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Pages
Awesome perl frameworks, libraries and software - PART 4
...master - The Zonemaster Project darold/squidanalyzer - Squid Analyzer parses Squid proxy access log and reports general statistics about hits, bytes, users, networks, top...2498 days ago
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...tions and a general model; “A variety of annotations are provided for each segregating variant: number of family (and family ID) each variant hits, variant genomic location and...2912 days ago
Wire posts
Video
Demo 4: Using BLAST/BLAT in Ensembl
We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.3893 days ago
Bio-Scripts
Blast result parser with Perl and Bioperl
...x output file and output the top N hits of each blast search result....f (@ARGV != 3); my ($infile,$numHits,$outfile) = @ARGV; print "Pa...ry_length; # output "no hits found" if there is no hits...# flow control for the number of hits needed last if ($count ==...2918 days ago
- ...default = stdin -A Multiple Hits window size (zero for single...40 -f Threshold for extending hits [Integer] default = 0...efault = 7.0 -P 0 for multiple hits 1-pass, 1 for single hit 1-pa...default = 0 -K Number of best hits from a region to keep [Intege...
954 days ago
- +1 more Bio-Scripts
Tags
How to print only the first best hit from blastn tool?
I used the following command to print the blast hit. [Terminal] blastn -query aaa.fa -db blastdb/nt -evalue 10e-5 -num_threads 4 -max_target_seqs 1 -outfmt '6 qseqid staxid qstart qend sallseqi sstart send evalue length frames qcovs' -out testBlastSee But the outfile print many hits, I only...Tags: blastn, blastall, megablast, top, hits
2624 days ago
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Comments
Comment on "China’s BGI says it can sequence a genome for just $100"
https://news.bloomberglaw.com/ip-law/illumina-hits-rival-bgi-with-new-dna-sequencing-patent-lawsuit1531 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...ts. [50] -i --seed-inv [INT] Distance between neighboring seeding fragments. [100] -p --max-loci [INT] Maximum allowed number of seeding fragments' hits. [200] -V --SV-len [INT] Expe...2126 days ago
- +3 more Comments
