Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large...g lightweight data structures and multi-threaded parallelization, allowing to assemble human...2327 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
SMASH is a completely alignment-free method to find and visualise rearrangements between pa...es (only value varies). The following image, illustrating the information maps between human...2327 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory relationships of 800 human TFs and 828...2327 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes...thods from Juicer (Durand & Shamim et al., Cell Systems, 2016) and Juicebox (Durand & Robinson et al., Cell...2320 days ago
HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes
HGT-Finder: (i) can be used for HGT detection in both prokaryotes and eukaryotes, (ii)...it is to be horizontally transferred, and (iii) is fully automated (requires minimal human...2300 days ago
2284 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the s...e Genome Alignment (WGA), and synteny). One is comparing huma...Transcriptome lncRNAs Protein-coding Human...849 days ago
Carefully opt for human reference genome
Heng Li posted several issues with the human reference genomes given in these resources and suggests...llowing compressed FASTA file to be used as hg38/GRCh38 huma...issues: More at http://lh3.github.io/2017/11/13/which-human...1538 days ago
G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily conserved genomic regions between huma...lignments pursuing higher coverage (1,2). Annotations of human...2215 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Course...dations for Life Scientists 2016 November - Uppsala2017 Mars - Uppsala Single cell...2210 days ago